Read pairs total | 89,456,633 | |
Reads with known barcode | 82,978,544 | 92.8% |
Reads trusted | 73,914,231 | 82.6% |
Reads modified | 2,313,902 | 2.6% |
Reads written | 85,292,446 | 95.3% |
Barcoded reads written | 85,292,446 | 95.3% |
Read pairs total | 102,418,628 | |
Reads with known barcode | 94,980,309 | 92.7% |
Reads trusted | 87,063,479 | 85.0% |
Reads modified | 2,660,778 | 2.6% |
Reads written | 97,641,087 | 95.3% |
Barcoded reads written | 97,641,087 | 95.3% |
Reads total | 740,882,919 | |
Barcoded reads | 740,882,919 | 100.0% |
Reads excluded | 261,503,006 | 35.3% |
.. MQ<20 | 75,028,109 | 10.1% |
.. anomalous pair | 15,443,099 | 2.1% |
.. filtered | 186,474,897 | 25.2% |
.. duplicates | 117,938,950 | 15.9% |
.. unmapped | 19,901,841 | 2.7% |
.. mate unmapped | 20,537,134 | 2.8% |
.. supplementary | 46,474,085 | 6.3% |
Unclipped reads | 330,852,254 | 45.9% |
Read pairs total | 72,026,093 | |
Reads with known barcode | 66,848,355 | 92.8% |
Reads trusted | 55,731,824 | 77.4% |
Reads modified | 1,845,703 | 2.6% |
Reads written | 68,694,058 | 95.4% |
Barcoded reads written | 68,694,058 | 95.4% |
Read pairs total | 100,263,542 | |
Reads with known barcode | 92,990,456 | 92.7% |
Reads trusted | 84,897,200 | 84.7% |
Reads modified | 2,586,370 | 2.6% |
Reads written | 95,576,826 | 95.3% |
Barcoded reads written | 95,576,826 | 95.3% |
Unique barcodes total | 1,693,058 | |
Good GEMs | 1,207,872 | 71.3% |
Excluded barcodes | 485,186 | 28.7% |
.. fewer than 2 good read pairs | 419,793 | 24.8% |
.. no good fragments | 65,393 | 3.9% |
.. unlisted barcode sequence | 0 | 0.0% |
Reads in good GEMs | 471,993,130 | 63.7% |
Reads in good fragments | 456,540,982 | 61.6% |
Fragment size N50 | 59,820 | |
.. N10x | 200,600 | |
.. N20x | 169,100 |